Molecular Genomics Unit

  • About us
  • Stakeholders
  • Projects
  • Awards
  • Staff Members
  • Participants
  • Equipment
  • News
  • Event
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  • Maps
  • Teaching & Training
  • Labs Equipment Analysis
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About us

We are Molecular Genomics Unit in -MASRI-(Medical Ain Shams Research Institute) and we are the is the first accredited oncogenomics lab in Egypt.

And Our unit includes DNA & RNA extraction labs, RT- PCR Lab, NGS sequencing lab and with highly trained staff.

We specialize in scientific research with our highly experienced, qualified and trained professionals in the field of Genomics.

Our mission: -to improve the quality of biomedical and clinical research & to address national health problems,

-building research capacity through technology transfer.

Our vision: to be a regional leader in medical research delivering global improvement in human health.

Our values: patient safety - confidentiality accurate results. short TAT

Collaborated on research projects with

* The Science, Technology, and Innovation Funding Authority (STDF),

* MATREX (MASRI Cancer Biobank and integrated Genomic Solution Accredited Center of Scientific Excellence),

* The Naval Medical Research Unit (NAMRU),

* MARC

* FUDAN Cancer Hospital

* Pharmaceutical companies

* British council

* ASRT

* ABBOTT

* Zewail city for Science and Technology

Research and publication

Abbott project : Abbott / pandemic defense site in Egypt

 

Awards

Granted accreditation in laboratory Molecular analysis of Oncogenomic tests accredited according to ISO 15189 by EGAC.

Many Awards of appreciation for international Publications

Award of Good Management of genomic Lab during the COVID pandemic

People

Prof. Sara Hassan Agwa Dr. Reham Mamdouh Darwish
Dr. Aya Mohamed Abd Elsamee DR. Shaimaa Moustafa El Sayed
Juniors’ lab specialists  

Mahmoud Ashraf Adly
Mahmoudashraf59820@gmail.com
Tel : 01555344351
Biotechnologist at Molecular Genomics Unit at MASRI
Deputy of preanalytical Unit Director at MASRI
Made an international publication in Scopus journal: https://orcid.org/0009-0004-9853-8032
B.Sc. of Biotechnology at Misr University for Science and Technology
M.Sc. student of Biotechnology at Faculty of Science at Helwan University

Jomana Osama Hashim
Jomana.o.hashim@gmail.com
BSc. Degree of Biochemistry Science, Ain Shams University
M.Sc. student of Biochemistry Science, Ain Shams University
Biochemist at Molecular Genomics Unit at MASRI
Junior in Molecular Genomics Unit at MASRI

 

Fatma Naser Arafa
fatmanaserarafa@gmail.com
Junior lab specialist - Genomics Unit at MASRI
BSc. in Science,Al-Azhar University
Master student in Molecular biology- Faculty of Science, Al-Azhar University

Dalia Hussein Ibrahim
daliahussein67@gmail.com
Junior lab specialist - Genomics Unit at MASRI
BSc. in Biotechnology - Misr University for Science and Technology
Master student in Biotechnology - Faculty of Science, Cairo University

 

Participants

 (2018-2020): participant in project of the academy of scientific research and technology (ASRT) under the name of: implementation of comprehensive molecular and next generation sequencing based genetic testing strategy to improve and prevent fatal outcomes of coronary artery disease related to familiar hypercholesterolemia.

 (2019-2022): participant in project: THE POWER OF TWO : NEXT GENERATION SEQUENCING AND BIOINFORMATICS IN TRANSCRIPTOMIC INTEGRATIVE ANALYSIS OF HEPATOCELLULAR CARCINOMA IN EGYPTIANS.

 participant in the project funded by NAMURU-3 in collaboration with WHO and CDC in a project titled SENTINEL SURVEILLANCE FOR SEVERE ACUTE RESPIRATORY ILLNESS (SARI) IN THE EASTERN MEDITERNIAN REGION(EMR.

 participant in Molecular research course MASRI for Breast –Gynecological & immunology International cancer conference ( BGICC) Jan2019,2020,2024 July 2021 and 2022, and for International Gastrointestinal, liver & Uro- oncology conference (IGILUC)

Apr 2019 , Jan 2021 and 2022, 2023.

 participant in :

• NGS Hands-on presented by Analysis, Thermo Fisher Scientific partner in Egypt.

• Advanced Statistical Analysis in Academic Research.

• Medical NGS Bio informatics.

• Tissue Culture Hands on workshop.

• Hands-on : stem cells charactarization by Flow Cytometry workshop.

• Post Conference :HLA-Typing on NGS Jan 2021https://medsol.zohobackstage.com/Post-ConferenceHLA-Typing

 

 

News 

Granted accreditation in molecular analysis at Molecular genomics unit
A visit from Gombe State University in Nigeria in their short visit to Egypt with alot of knowledge and experience exchanging. raising the concept of collaboration.

A fruitful meeting with GSK representatives to discuss future collaboration with Medical Ain Shams Research Institute

Report of the visit of the Portuguese delegation

Report of the visit of OXFORD

Event

Organizing Molecular course in International conferences (BGICC and IGULC) from 2017 till now.

Teaching & Training

MASRI molecular research unit put in use all the facilities available to help educate and train medical students in the field of medical molecular genetics through the highly equipped and renovated molecular labs. This applies to governmental and private universities and institutes. eg: postgraduate students training from parasitology department, training courses for undergraduate students from German University in Egypt.

Postgraduates (Master, MD, or Researchers) benefit from the highly

Equipped molecular labs in getting molecular consultation and molecular laboratory assistance during completing their practical molecular part of the thesis.

First NGS Hands on Workshop in ASU Faculty of Medicine MASRI Molecular Biology Labs 19-21 Jan 2019
NGS Demo Workshop Coordinated by MASRI in BCIG Conference Jan. 2019
NGS Molecular bioinformatic workshop coordinated by MASRI April 2019.
Droplet digital pcr hands on workshop, coordinated by MASRI Molecular Genomic Unit on 6 August 2019.
MASRI & Zewail Scientific Day 6 August 2019
WHOLE TRANSCRIPTOME (RNA SEQ) HANDS ON Ion Torrent NGS WORKSHOP- MASRI MOLECULAR GENOMIC LABS 11-13 JANUARY 2020
NGS HLA TYPING WORKSHOP 22-23 JANUARY 2021
HRD WORKSHOP: 4- DAYS WORKSHOP Comprehensive Hand on Training on NGS - HRD GENOMICS - from samples Collection to Final Data Analysis

Labs Equipment Analysis

* Molecular Biology and Genomics Unit

RT- PCR Lab

NGS sequencing lab

DNA & RNA extraction labs

gel electrophoresis lab

* NGS - Next-generation sequencing

Illumina NextSeq 550 NGS instrument

Illumina MiSeq NGS instrument

Ion Torrent next-generation sequencing

* Real-time PCR

Applied Biosystems™ 7500 FAST Real-Time PCR Systems

Applied Biosystems™ the 7500 Fast Dx Instrument

Quant Studio™ 5 Real-Time PCR System

Realtime PCR ® Easy PGX

* Conventional PCR

Applied Biosystems™ ProFlex™ PCR System

Quant Studio™ 5 Real-Time PCR System

* Quality control equipment

(Agilent TapeStation system ( automated electrophoresis

Invitrogen™ Qubit™ 3 Fluorometer

BioSpectrometer® from Eppendorf

* AmoyDx® NGS data analysis system (ANDAS)

* Laboratory accessories equipment

* Any of molecular analysis

Laboratory molecular analysis of EGFR, KRAS and NRAS and other single genes (pharmacogenomic genes ) -( accredited according to ISO 15189 by EGAC

HRD panel Analysis

lung cancer NGS panel

Colon cancer NGS panel

brca1,2 panel

Master panel NGS panel (550) gene

Gallery